Friday, September 26, 2014

My Campaign Has Fledged [Successfully!]

My campaign on Instrumentl, a crowdfunding website specific to women in science, is officially fully funded!



You can still check out my project overview and bio here:
http://www.instrumentl.com/campaigns/denaemmerson

And you can watch my video below, which provides an overview of my project and what your funds will go towards:




A HUGE thank you to those who donated over the three-week campaign! You are amazing and generous and l am forever grateful!
Aaron Borovoy
Gauri Manglik
Tom & Karen Emmerson
Jeff Bell
David Emmerson
Sue Engle
Elin Pierce, PhD
Robin Keith
Sunni Robertson
Martha & Ben Weaver
Samantha Young
Hannah McDonald
Emily Moffitt
Norma Emmerson
Wanda Sowa
Laura Emmerson
Ylenia
Lupe McDonald
Krista Parry
John Richards
Mark Jenkins
Byron Ryono
Wanda Sowa - again!
Todd and Sharon Dunn
Elizabeth Davis
Helen Cheng
Hayley Farr
Alexis Weinnig
Carol Clark 
Luis Amaya
Victoria Kentner
Christopher Quock
As well as several anonymous donors - thank you!!

Thursday, September 25, 2014

Western Bird Banding Association 2014 Meeting

This past weekend Allison Nelson (remember her thrush project??) and I road tripped up to Humboldt, CA to share our research at the 2014 Meeting of the Western Bird Banding Association (WBBA.)


The conference spanned from September 18-21 and saying it was bird-heavy is an understatement! We were there with representatives from all of the major banding stations up and down the West Coast and even inland into the Southern US a bit (a couple Arizona and New Mexico folks were in attendance.)

Both HBBO and WBBA use a bird in their logo that should be familiar to you at this point!

Most of the conference took place at the Humboldt Bay Bird Observatory (HBBO) on the Humboldt Bay Wildlife Refuge:








Friday

After a nice meet-and-greet dinner Thursday night the conference kicked off bright and early with a morning of banding at HBBO. Even though most of us in attendance were experienced bird banders, it's always interesting to watch how other stations operate. For example, at the station I work at (Coyote Creek) we score fat on a 0-7 scale, 0 being none and 7 being 'very excessive.' HBBO uses a 'none-full' scale - the bird either had no fat, half fat, or full fat.


Even though we have different methodologies we share many of the same species. Below are two yellow warblers - one from HBBO (top) and one from Coyote Creek (bottom):




There's only so many people that can pack into a banding station so some of us departed for a guided walk of the local dunes. The Lanphere Dunes on the Humboldt Bay Wildlife Refuge contain some of the most eerie and beautiful habitat I've ever seen.





Animal tracks were very easy to spot in the wet sand. This skunk left his footprints behind:


And of course:


This was a bird conference after all!

In the afternoon there were a series of workshops, including one led by Allison on bleeding techniques and geolocators.

One helpful workshop was on bird first aid. It is very rare but if we do come across an injured bird – either as a result of netting or if it had a previous injury – it is our responsibility as banders and conservationists to do all that is in our power to help that bird. In this workshop we learned how to splint a broken leg, how to calm a stressed bird, and how to tend to a dislocated limb. Obviously we didn’t have any birds to work with so we splinted broken reeds for practice.


Friday culminated with a social and a dinner followed by a bluegrass concert featuring Arcata locals, the Compost Mountain Boys:


Saturday

Saturday was the presentation and poster day. The day was packed with presentations on everything from nesting habits, molt patterns, and aging techniques of birds from Canada to South America.

Allison gave a great update on her hermit thrush geolocator project. Two years ago she put geolocators on birds in both the South and North Bay. Last year, some of those birds were recaptured and their geolocators removed. Turns out the South Bay birds fly further north and travel faster than the hermit thrushes in the North Bay. It’s right around the time of year that we will be seeing the hermit thrushes migrate back in and we’re hoping to round up the remaining geolocators.

On Saturday evening there was a social and poster session. Only three of us had posters so we certainly got a bit of foot traffic! Though my project is still in the early stage and there aren’t too many conclusions to draw just yet, I had a great time discussing my methodology and initial data analysis.

C.J. Ralph, head of the HBBO and chair of the conference, stopped by for an engaging explanation:



Sunday

Sunday morning Allison went on a birding tour in the Humboldt County mountains while I spent some time with our host's chickens:


Before hitting the road for our 5 hour drive home we stopped by downtown Arcata to check out the North Country Fair:


Arcata is just quirky like that.




All in all it was a successful and informative trip. Allison was even elected and unanimously approved to the HBBO board! Next year's WBBA meeting will be hosted by the Vancouver Avian Research Centre so we'll be heading north of the border! 

Sunday, September 7, 2014

Avian Malaria (& Relatives) Workshop - Part 3 - Indentifying Blood Parasites

This post brings me to my third and concluding update on the Third Annual International Workshop on Malaria and Related Haemosporidian Parasites of Wildlife (whew - that title is epic!) [Here's Part 1 and Part 2]

The first two days of the four day workshop focused on blood smears and identifying parasites by their physical characteristics. The second two days focused on vectors and genetic techniques.

Vectors

Malaria, as we all know, is a vector-borne disease transmitted by mosquitoes. Insect vectors are the sites of sexual reproduction for haemosporidian parasites; without these vectors the parasites would not be able to complete their life cycle.

Therefore, as avian parasitologists, it is important for us to know how to identify vectors that could potentially spreading infectious agents to our birds. It's not just mosquitoes we need to be concerned about either. Each of the three parasite genera, Plasmodium, Haemoproteus, and Leucocytozoon, are transmitted by different types of insects.

The following vector images are from Avian Malaria Parasites and Other Haemosporidia by Gediminas ValkiĆ«nas. 

Plasmodium is transmitted by mosquitoes:

Haemoproteus is transmitted by biting midges and hippoboscid flies:

And Leucocytozoon is transmitted by black flies:


Each vector has its own unique set of habitat requirements. Combined with the habitat requirements of the bird hosts and the parasites, understanding these insect-vectored diseases quickly becomes quite complex.

For the purposes of this workshop we focused on mosquito vectors. We learned how to trap, identify, and dissect mosquitoes. This last skill in particular was difficult to master. Mosquitoes seem pretty big when you're swatting them on your arm but when you're actually trying to keep parts of them intact as you sever them with a small knife, believe me they seem very small.

Mosquito Traps


Photo by Francisco Ferreira

This trap is called a gravid trap. It attracts gravid ("pregnant") female mosquitoes looking for somewhere to lay their eggs. In the bottom bucket there is a putrid liquid called (very technically) "smelly water" - a lovely mixture of cow feces, water, and yeast left to rot in the hot sun for a couple of months. The vertical contraption contains a fan at the top to suck up female mosquitoes as they come to lay their eggs.

Ellen Martinsen explaining the inner mechanism of the gravid trap - Photo by Francisco Ferreira

Photo by Francisco Ferreira

This trap is a CDC Light Trap. Developed by the Centers for Disease Control, this trap uses both carbon dioxide and light to attract in mosquitoes. You may know this already but it is only female mosquitoes that bite you. Ingeniously but frustratingly, females use your exhaled breath (CO2, carbon dioxide) to find you. This trap works in much the same way - in the dark thermos there is dry ice that sublimates to release CO2 gas. Mosquitoes fly towards it and are sucked into the mesh bag by a fan at the top of the trap. Unlike the gravid trap the CDC light trap is also equipped with a flashing light that draws in both males and females. 


Identification and Dissection


One thing that is important to note at this stage is the importance of keeping your mosquito alive prior to dissection. A dead mosquito is a squishy mosquito and impossible to dissect properly. For this reason the traps are set out at night and checked the following day. Any trapped mosquitoes are brought back to the lab and kept alive in a mini habitat, such as this bug tent:



Just like parasite identification, mosquito ID was difficult at first but once we knew what to look for it became much easier. We used various physical characteristics including wings and palps to tell species apart:

From our Malaria Workshop handout materials (unknown source beyond that)

Once we knew our species and whether it was a male or a female (no use dissecting the males - they don't bite birds and therefore wont carry parasites), we moved on to dissection. We targeted both the salivary glands and the midgut of our insect vectors.

Presence of parasites in the salivary glands indicates the mosquito is a suitable vector - when mosquitoes bite they also inject an anticoagulant to keep the blood flowing. Parasites in the salivary glands will be injected into the host along with the anticoagulant. 

The midgut is the site of parasite reproduction. The "male" and "female" gametes fuse to form a zygote, which then implants in the gut lining of the mosquito and proceeds to divide and divide and divide. Eventually these divisions burst out and make their way to the salivary glands.

Carter Atkinson demonstrates mosquito dissection.

Below is a video from the 1980's that we watched in the workshop. Despite its age, it is an incredibly helpful video to reference technique.


I really cannot reiterate this enough - mosquitoes are small. It was absolutely essential to use a dissecting microscope just to see what we were doing. These were the tiny tools we used:


Initially we chopped off a lot of mosquito heads and lost the glands and guts into a boogery mess of mashed mosquito. But with some fine tuning of our large (comparatively) human hands, we were eventually able to isolate our organs of interest. 

Genetic Techniques


The last half of the last day focused on the use of genetics to determine the species and lineage of parasite as well as their phylogenetic relationships. We looked at several genetic sequences and became familiar with a couple different computer programs used to manipulate this kind of data. 


This picture is a little difficult to see but this is what a genetic sequence looks like read out on a computer screen. Peaks of different colors correspond to specific nucleotide bases - A, G, T, or C. Mutations unique to different parasites help to determine the specific infection present in a bird. These can then be pooled to create a phylogenetic tree, which helps to visualize relationships and evolutionary patterns. 


Saying Goodbye


It was so tough to say goodbye to everybody the last day. An early morning shuttle sent some students to bed early but not before a final round of "selfies" from the 2014 Malaria RCN Student Cohort:


Photos by Adam Krupski

Thank you to the Malaria RCN for this amazing opportunity. I am so grateful to have participated in this workshop and meet all these amazing biologists from around the world!